Package: EDCimport 0.5.2.9041

EDCimport: Import Data from EDC Software

A convenient toolbox to import data exported from Electronic Data Capture (EDC) software 'TrialMaster'.

Authors:Dan Chaltiel [aut, cre]

EDCimport_0.5.2.9041.tar.gz
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EDCimport.pdf |EDCimport.html✨
EDCimport/json (API)
NEWS

# Install 'EDCimport' in R:
install.packages('EDCimport', repos = c('https://danchaltiel.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/danchaltiel/edcimport/issues

Pkgdown site:https://danchaltiel.github.io

On CRAN:

5.94 score 11 scripts 719 downloads 57 exports 49 dependencies

Last updated 4 hours agofrom:7696d35cb8. Checks:5 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 20 2025
R-4.5-winNOTEFeb 20 2025
R-4.5-macNOTEFeb 20 2025
R-4.5-linuxNOTEFeb 20 2025
R-4.4-winOKFeb 20 2025
R-4.4-macOKFeb 20 2025
R-4.3-winOKFeb 20 2025
R-4.3-macOKFeb 20 2025

Exports:%>%assert_no_duplicateassert_no_rowscheck_subjidcrf_status_plotedc_browse_exceledc_clean_namesedc_crf_plotedc_data_stopedc_data_warnedc_data_warningsedc_db_to_exceledc_exampleedc_example_plotedc_find_columnedc_find_valueedc_full_joinedc_inform_codeedc_left_joinedc_lookupedc_optionsedc_pal_crfedc_patient_gridplotedc_peek_optionsedc_population_plotedc_reset_optionsedc_right_joinedc_split_mixededc_swimmerplotedc_unify_subjidedc_vieweredc_warn_extraction_dateedc_warn_patient_diffsfct_yesnofind_keywordget_common_colsget_datasetsget_lookupharmonize_subjidlastnews_tableload_databaseload_listmanual_correctionread_all_csvread_all_sasread_all_xptread_tm_all_xptread_trialmasterreset_manual_correctionsave_plotlysave_sessioninfosearch_for_newer_dataselect_distinctset_project_nametable_formattibbleunify

Dependencies:bitbit64clicliprcolorspacecpp11crayondplyrfansifarverforcatsfsgenericsggplot2gluegtablehavenhmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerreadrrlangscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithr

1 - Read your database

Rendered fromreading.qmdusingquarto::htmlon Feb 20 2025.

Last update: 2025-02-16
Started: 2025-02-14

2 - Post processing

Rendered frompostprocessing.qmdusingquarto::htmlon Feb 20 2025.

Last update: 2025-02-15
Started: 2025-02-15

3 - Data checking

Rendered fromchecking.qmdusingquarto::htmlon Feb 20 2025.

Last update: 2025-02-15
Started: 2025-02-15

4 - Database Visualizing

Rendered fromvisualizing.qmdusingquarto::htmlon Feb 20 2025.

Last update: 2025-02-19
Started: 2025-02-16

5 - Utility Functions

Rendered fromutils.qmdusingquarto::htmlon Feb 20 2025.

Last update: 2025-02-16
Started: 2025-02-16

Readme and manuals

Help Manual

Help pageTopics
Assert that a dataframe has one row per patientassert_no_duplicate
Clean up the names of all datasetsedc_clean_names
Show the current CRF status distributioncrf_status_plot edc_crf_plot edc_pal_crf
Standardized warning systemassert_no_rows edc_data_stop edc_data_warn edc_data_warnings
EDCimport Databaseedc_database
Save the database as an Excel fileedc_browse_excel edc_db_to_excel
Example databaseedc_example edc_example_plot
Search the whole databaseedc_find_column edc_find_value find_keyword
Shows how many code you wroteedc_inform_code
Join within the EDCimport frameworkedc_full_join edc_left_join edc_right_join
Retrieve the lookup table from optionsedc_lookup get_lookup
Set global options for 'EDCimport'edc_options
Patient gridplotedc_patient_gridplot
See which 'EDCimport' option is currently set.edc_peek_options
Plot the populationsedc_population_plot
Reset all 'EDCimport' options.edc_reset_options
Split mixed datasetsedc_split_mixed
Swimmer plot of all dates columnsedc_swimmerplot
Harmonize the subject ID of the databaseedc_unify_subjid harmonize_subjid
Shiny data exploreredc_viewer
Warn if extraction is too oldedc_warn_extraction_date
Check the validity of the subject ID columncheck_subjid edc_warn_patient_diffs
Format factor levels as Yes/Nofct_yesno
Get columns that are common to multiple datasetsget_common_cols summary.common_cols
Retrieve the datasets as a list of data.framesget_datasets
Get a table with the latest date for each patientlastnews_table
Load a list in an environmentload_database load_list
Manual correctionmanual_correction reset_manual_correction
Read all '.csv' files in a directoryread_all_csv
Read all '.sas7bdat' files in a directoryread_all_sas
Read all '.xpt' files in a directoryread_all_xpt read_tm_all_xpt
Read the '.zip' archive of a TrialMaster exportread_trialmaster
Save a plotly to an HTML filesave_plotly
Save 'sessionInfo()' outputsave_sessioninfo
Search for newer datasearch_for_newer_data
Select only distinct columnsselect_distinct
Set the project nameset_project_name
Identify if a dataframe has a long or a wide formattable_format
Unify a vectorunify